PCR Protocol — Code Harness Reconstruction

Kary Mullis metaphor applied to reconstructing code agent harnesses from leaked source code.

Full documentation: ~/workdir/study/coworks/kaggle-agent-security/docs/pcr_protocol.md

PCR Analogy

PCR Stage	Code Equivalent
DNA template	Leaked Claude Code source code (March version)
Primers	Local models that bind to each specific function
Thermal cycling	Elo tournament iterations
Amplification	Best translation selected per function
Result	New open-source implementation

Mobile (Claude iOS/React Native) — most restricted, Alefita's primary domain
Desktop (Claude Desktop) — already mapped: bundles, 226 feature flags, voice protocol
Claude Code (full agent) — most complex, source available

The goal is not a fork or patch. It's to rebuild from scratch operating on bare metal:

io_uring proved that POSIX I/O bypass is viable
Cell Broadband Engine (PS3) proved that deterministic compute without POSIX is viable
Apple Container Machine proved that macOS ↔ Linux bridging is seamless

Machine	Role
MacBook M3	Development, Apple Container Machine
PS3 Evilnat	Bare-metal inference (Cell BE, 1 PPE + 8 SPEs)
PC Windows	GPU training (RTX 2060)

CopyLeft / AsIs. No distribution of proprietary code. Research only. Local execution.